A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818275



Internal ID16407116
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:134576034..134626139hg38UCSC Ensembl
Innerchr4:135497189..135547294hg19UCSC Ensembl
Innerchr4:135716639..135766744hg18UCSC Ensembl
Innerchr4:135854794..135904899hg17UCSC Ensembl
Cytoband4q28.3
Allele length
AssemblyAllele length
hg3850106
hg1950106
hg1850106
hg1750106
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417861
SamplesNA18852
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818275
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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