A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818268



Internal ID16407109
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:124916745..124924963hg38UCSC Ensembl
Innerchr4:125837900..125846118hg19UCSC Ensembl
Innerchr4:126057350..126065568hg18UCSC Ensembl
Innerchr4:126195505..126203723hg17UCSC Ensembl
Cytoband4q28.1
Allele length
AssemblyAllele length
hg388219
hg198219
hg188219
hg178219
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417860
SamplesNA18852
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818268
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer