A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818085



Internal ID16406926
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:138794627..138827536hg38UCSC Ensembl
Innerchr2:139552197..139585106hg19UCSC Ensembl
Innerchr2:139268667..139301576hg18UCSC Ensembl
Innerchr2:139385929..139418838hg17UCSC Ensembl
Cytoband2q22.1
Allele length
AssemblyAllele length
hg3832910
hg1932910
hg1832910
hg1732910
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417479
SamplesNA18960
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818085
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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