A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818062



Internal ID16406903
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:83023462..83618345hg38UCSC Ensembl
Innerchr2:83250586..83845469hg19UCSC Ensembl
Innerchr2:83104097..83698980hg18UCSC Ensembl
Innerchr2:83162244..83757127hg17UCSC Ensembl
Cytoband2p11.2
Allele length
AssemblyAllele length
hg38594884
hg19594884
hg18594884
hg17594884
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1415894
SamplesNA06985
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818062
Frequency
Sample Size112
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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