A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv818037



Internal ID16406878
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:135457805..135472499hg38UCSC Ensembl
InnerchrX:134591730..134606424hg19UCSC Ensembl
InnerchrX:134419396..134434090hg18UCSC Ensembl
InnerchrX:134317250..134331944hg17UCSC Ensembl
CytobandXq26.3
Allele length
AssemblyAllele length
hg3814695
hg1914695
hg1814695
hg1714695
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417764
SamplesNA18978
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv818037
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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