A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv817876



Internal ID16060031
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:57134850..57154382hg38UCSC Ensembl
Innerchr19:57646218..57665750hg19UCSC Ensembl
Innerchr19:62338030..62357562hg18UCSC Ensembl
Innerchr19:62338030..62357562hg17UCSC Ensembl
Cytoband19q13.43
Allele length
AssemblyAllele length
hg3819533
hg1919533
hg1819533
hg1719533
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1418120
SamplesNA11882
Known GenesDUXA, ZIM3
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv817876
Frequency
Sample Size112
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer