A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv817643



Internal ID16406484
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:95979178..95982030hg38UCSC Ensembl
Innerchr14:96445515..96448367hg19UCSC Ensembl
Innerchr14:95515268..95518120hg18UCSC Ensembl
Innerchr14:95515268..95518120hg17UCSC Ensembl
Cytoband14q32.2
Allele length
AssemblyAllele length
hg382853
hg192853
hg182853
hg172853
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv1417355
SamplesNA18612
Known Genes
MethodSNP array
AnalysisAn integrated HMM algorithm was developed and we constructed accurate models for log R Ratio and B Allele Frequency. We developed more realistic models for state transition between different copy number states. PennCNV incorporates the population allele frequency for each SNP and the distance between adjacent SNPs. We incorporated a Bayesian approach into PennCNV to use family information for a posteriori CNV validation and CNV boundary mapping.
PlatformGPL6433
Comments
ReferenceWang_et_al_2007
Pubmed ID17921354
Accession Number(s)nsv817643
Frequency
Sample Size112
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer