A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv6900



Internal ID15205170
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
OuterchrX:49581620..49605073hg38UCSC Ensembl
OuterchrX:49346223..49369676hg19UCSC Ensembl
OuterchrX:49233167..49256620hg18UCSC Ensembl
OuterchrX:49049434..49072916hg17UCSC Ensembl
CytobandXp11.23
Allele length
AssemblyAllele length
hg3823454
hg1923454
hg1823454
hg1723483
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv6329, nssv5224
SamplesNA19129, NA12156
Known GenesGAGE1, GAGE12C, GAGE12D, GAGE12E, GAGE12H, GAGE2A
MethodSequencing
AnalysisEnd-sequence pairs were mapped to the human genome assembly (hg17) using a previously described algorithm (Tuzun et al 2005)
PlatformCapillary
Comments
ReferenceKidd_et_al_2008
Pubmed ID18451855
Accession Number(s)nsv6900
Frequency
Sample Size9
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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