A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv602054



Internal ID16042777
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32004257..32812026hg38UCSC Ensembl
Innerchr6:31972034..32779803hg19UCSC Ensembl
Innerchr6:32080012..32887781hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg38807770
hg19807770
hg18807770
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv10472n54
Supporting Variantsnssv1053790
Samples
Known GenesAGER, AGPAT1, ATF6B, BTNL2, C4A, C4B, C4B_2, C6orf10, CYP21A1P, CYP21A2, EGFL8, FKBPL, GPSM3, HCG23, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, LOC100507547, MIR6721, MIR6833, NOTCH4, PBX2, PPT2, PPT2-EGFL8, PRRT1, RNF5, RNF5P1, STK19, TNXA, TNXB
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)nsv602054
Frequency
Sample Size17421
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer