A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv601961



Internal ID16042684
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:31900545..32516591hg38UCSC Ensembl
Innerchr6:31868322..32484368hg19UCSC Ensembl
Innerchr6:31976301..32592346hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg38616047
hg19616047
hg18616046
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv10463n54
Supporting Variantsnssv1053548
Samples
Known GenesAGER, AGPAT1, ATF6B, BTNL2, C2, C4A, C4B, C4B_2, C6orf10, CFB, CYP21A1P, CYP21A2, DXO, EGFL8, FKBPL, GPSM3, HCG23, HLA-DRA, LOC100507547, LOC102060414, MIR1236, MIR6721, MIR6833, NELFE, NOTCH4, PBX2, PPT2, PPT2-EGFL8, PRRT1, RNF5, RNF5P1, SKIV2L, STK19, TNXA, TNXB, ZBTB12
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)nsv601961
Frequency
Sample Size17421
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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