A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv601610



Internal ID16042333
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:31312324..31992993hg38UCSC Ensembl
Innerchr6:31280101..31960770hg19UCSC Ensembl
Innerchr6:31388080..32068749hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg38680670
hg19680670
hg18680670
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv10403n54
Supporting Variantsnssv1052773
Samples
Known GenesABHD16A, AIF1, APOM, ATP6V1G2, ATP6V1G2-DDX39B, BAG6, C2, C4A, C4B, C4B_2, C6orf25, C6orf47, C6orf48, CFB, CLIC1, CSNK2B, DDAH2, DDX39B, DXO, EHMT2, GPANK1, HCG26, HCP5, HLA-B, HSPA1A, HSPA1B, HSPA1L, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICA, MICB, MIR1236, MIR4646, MIR6832, MIR6891, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, PRRC2A, SAPCD1, SKIV2L, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, TNF, VARS, VWA7, ZBTB12
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)nsv601610
Frequency
Sample Size17421
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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