A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv562533

Internal ID

16349942

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr13:83528305..83583792	hg38	UCSC Ensembl
Inner	chr13:84102440..84157927	hg19	UCSC Ensembl
Inner	chr13:83000441..83055928	hg18	UCSC Ensembl

Cytoband

13q31.1

Allele length

Assembly	Allele length
hg38	55488
hg19	55488
hg18	55488

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

M

Merged Variants

Supporting Variants

nssv816504, nssv816477, nssv816555, nssv816512, nssv816521, nssv816452, nssv816359, nssv816537, nssv816382, nssv816379, nssv1148546, nssv816557, nssv816395, nssv816498, nssv816482, nssv816500, nssv816464, nssv816388, nssv816530, nssv816505, nssv816419, nssv816513, nssv816490, nssv816342, nssv816350, nssv1148541, nssv816468, nssv816389, nssv1148543, nssv816434, nssv816437, nssv816480, nssv816343, nssv816551, nssv816442, nssv816421, nssv816370, nssv816544, nssv816364, nssv816347, nssv816550, nssv816377, nssv816456, nssv816455, nssv816471, nssv816348, nssv816438, nssv816559, nssv816420, nssv816404, nssv816390, nssv1148537, nssv816435, nssv816540, nssv816358, nssv816394, nssv816515, nssv816423, nssv816519, nssv816357, nssv816449, nssv816518, nssv816533, nssv816397, nssv816538, nssv816422, nssv816381, nssv816558, nssv816546, nssv816462, nssv816539, nssv816525, nssv816487, nssv816362, nssv816352, nssv816566, nssv816407, nssv816554, nssv816534, nssv1148536, nssv816463, nssv816481, nssv816380, nssv816510, nssv816501, nssv816384, nssv816552, nssv816494, nssv816411, nssv816526, nssv816428, nssv816400, nssv816547, nssv816527, nssv816560, nssv816416, nssv816344, nssv816472, nssv816387, nssv816543, nssv816401, nssv816556, nssv816524, nssv816488, nssv816353, nssv816565, nssv816386, nssv1148540, nssv816523, nssv816492, nssv816376, nssv1148542, nssv1148544, nssv816562, nssv816516, nssv816486, nssv816385, nssv816368, nssv816351, nssv816430, nssv816469, nssv816372, nssv816367, nssv816399, nssv816366, nssv816489, nssv816402, nssv816484, nssv816429, nssv816474, nssv816361, nssv816457, nssv816441, nssv816444, nssv816440, nssv816433, nssv816446, nssv816458, nssv816450, nssv816522, nssv816393, nssv816445, nssv816412, nssv816495, nssv816371, nssv816568, nssv816460, nssv816563, nssv816536, nssv816459, nssv816447, nssv816493, nssv816448, nssv816432, nssv816473, nssv816375, nssv816520, nssv816398, nssv816410, nssv816465, nssv816470, nssv816406, nssv816466, nssv816511, nssv816345, nssv816374, nssv816436, nssv816408, nssv816517, nssv816479, nssv816467, nssv816485, nssv816478, nssv816483, nssv816355, nssv816553, nssv816528, nssv816567, nssv816454, nssv816443, nssv816503, nssv816413, nssv816383, nssv816427, nssv1148539, nssv816507, nssv816451, nssv816532, nssv816414, nssv816499, nssv816426, nssv816373, nssv816509, nssv816531, nssv816496, nssv816491, nssv816561, nssv816475, nssv816431, nssv816425, nssv816497, nssv816349, nssv816403, nssv816476, nssv816369, nssv816461, nssv816360, nssv816418, nssv816542, nssv816354, nssv816545, nssv816409, nssv816365, nssv816356, nssv816391, nssv816529, nssv816506, nssv816508, nssv816396, nssv816415, nssv816514, nssv816405, nssv1148538, nssv816535, nssv816439, nssv816392, nssv816424, nssv816341, nssv816417, nssv816346, nssv816564, nssv816541, nssv816453, nssv1148545, nssv816548, nssv816378, nssv816363, nssv816502, nssv816549

Samples

HGDP01005, HGDP00860, HGDP00970, HGDP01049, HGDP00707, HGDP01058, HGDP00793, HGDP00864, HGDP00855, HGDP01044, HGDP00859

Known Genes

Method

SNP array

Analysis

Illumina SNP array copy number analysis

Platform

Not reported

Comments

Reference

Cooper_et_al_2011

Pubmed ID

Accession Number(s)

Frequency

Sample Size	17421
Observed Gain	0
Observed Loss	239
Observed Complex	0
Frequency	n/a