Variant Details

Variant: nsv550755

Internal ID

16338164

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr10:46172086..46332377	hg38	UCSC Ensembl
Inner	chr10:47543322..47703613	hg19	UCSC Ensembl
Inner	chr10:47013328..47173619	hg18	UCSC Ensembl

Cytoband

10q11.22

Allele length

Assembly	Allele length
hg38	160292
hg19	160292
hg18	160292

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

dgv1112n54

Supporting Variants

nssv1173643, nssv1174449, nssv1174499, nssv1174450, nssv1173646, nssv747512, nssv747513, nssv747504, nssv747515, nssv747484, nssv747456, nssv1174461, nssv747461, nssv1174489, nssv1174444, nssv747469, nssv1174479, nssv1174464, nssv747464, nssv747460, nssv747479, nssv747502, nssv1174478, nssv747467, nssv747449, nssv1174500, nssv747451, nssv1174484, nssv1173644, nssv747517, nssv747519, nssv1174466, nssv1174458, nssv1174495, nssv1174446, nssv747445, nssv1174475, nssv747483, nssv747509, nssv1174451, nssv1174448, nssv1174488, nssv1174482, nssv747447, nssv747485, nssv1174472, nssv747450, nssv747494, nssv1174439, nssv1173641, nssv747495, nssv747473, nssv747463, nssv1174487, nssv747472, nssv747482, nssv1174497, nssv1174473, nssv1174468, nssv1174442, nssv747455, nssv747459, nssv747493, nssv1174465, nssv747501, nssv1174460, nssv747492, nssv1174498, nssv747522, nssv747524, nssv747518, nssv747505, nssv747454, nssv1174486, nssv1174467, nssv1174463, nssv747496, nssv747487, nssv1174456, nssv747476, nssv747465, nssv747477, nssv747514, nssv1174454, nssv1174453, nssv1174476, nssv747507, nssv747468, nssv1174462, nssv747497, nssv1174437, nssv1174452, nssv1174438, nssv1174469, nssv1174501, nssv747452, nssv747444, nssv747521, nssv747453, nssv1174470, nssv1174494, nssv1174474, nssv1174459, nssv747480, nssv747462, nssv1174447, nssv1173638, nssv1174480, nssv747516, nssv1173642, nssv1174496, nssv1174492, nssv747491, nssv747498, nssv1173639, nssv1174483, nssv1174491, nssv1173637, nssv747503, nssv747474, nssv1174477, nssv1174443, nssv747510, nssv747499, nssv1174441, nssv747523, nssv747457, nssv1173640, nssv1174485, nssv747448, nssv1174436, nssv1173645, nssv747466, nssv747486, nssv747471, nssv1174455, nssv747490, nssv747489, nssv747481, nssv747520, nssv747478, nssv747508, nssv1174490, nssv1174440, nssv747506, nssv747470, nssv747525, nssv747446, nssv747500, nssv1174471, nssv747488, nssv747458, nssv1174481, nssv747511, nssv1174493, nssv1174457, nssv1174445, nssv747475

Samples

1780862599_A, 1780854538_A, NINDS_243, HGDP00759, 1780854556_A, HGDP00650, HGDP00108, HGDP00445, HGDP00739, HGDP01248, HGDP00154, 1780862433_A, HGDP00462, HGDP00731, HGDP00226, 1780854537_A, 1780854517_A, HGDP00189, HGDP00140, 1798860084_A, HGDP00895, HGDP00640, 1782681117_A, 1798860114_A, HGDP00476, 1798860191_A, 1780862480_A, HGDP00883, HGDP01155, HGDP00526, HGDP00896, 1787431198_A, 1782681086_A, 1782681076_A, HGDP00607, HGDP00612, HGDP00626, HGDP00423, 1780862416_A, HGDP00882, 1780862160_A, 1780854039_A, HGDP00649, HGDP01332, 1780862410_A, 1782681093_A, HGDP01253, HGDP00625, 1780854216_A, HGDP00886, HGDP01359, 1780854477_A, 1798860565_A, HGDP00577, HGDP00039, HGDP00790, HGDP00996, HGDP00742, 1780854464_A, 1780854382_A, HGDP00600, 1780862207_A, HGDP01156, HGDP00677, 1780862252_A, 1780854441_A, HGDP00025, HGDP00254, HGDP00007, 1780854393_A, HGDP01000, 1798860570_A, 1780862304_A, HGDP00901, HGDP00338, 1780854463_A

Known Genes

ANTXRL, ANTXRLP1

Method

SNP array

Analysis

Illumina SNP array copy number analysis

Platform

Not reported

Comments

Reference

Cooper_et_al_2011

Pubmed ID

21841781

Accession Number(s)

nsv550755

Frequency

Sample Size	17421
Observed Gain	149
Observed Loss	9
Observed Complex	0
Frequency	n/a