A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv517751

Internal ID

15098358

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:34355367..34579095	hg38	UCSC Ensembl
Inner	chr15:34647568..34871296	hg19	UCSC Ensembl
Inner	chr15:32434860..32658588	hg18	UCSC Ensembl
Inner	chr15:32434860..32658588	hg17	UCSC Ensembl

Cytoband

15q14

Allele length

Assembly	Allele length
hg38	223729
hg19	223729
hg18	223729
hg17	223729

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

M

Merged Variants

Supporting Variants

nssv689215, nssv656051, nssv689452, nssv669927, nssv686948, nssv664122, nssv656999, nssv654002, nssv681331, nssv685454, nssv689417, nssv683465, nssv653662, nssv682673, nssv686530, nssv659527, nssv683414, nssv671345, nssv685265, nssv668786, nssv670332, nssv662041, nssv664196, nssv680188, nssv653674, nssv693899, nssv682800, nssv660486, nssv656161, nssv651698, nssv689537, nssv686551, nssv680426, nssv665040, nssv680509, nssv678471, nssv664756, nssv681373, nssv671931, nssv669683, nssv656433, nssv692055, nssv679377, nssv704410, nssv691713, nssv665581, nssv659869, nssv685264, nssv667121, nssv692536, nssv684921, nssv669745, nssv667225, nssv670436, nssv657440, nssv686992, nssv697874, nssv657612, nssv651718, nssv676033, nssv691293, nssv673336, nssv678239, nssv653502, nssv693530, nssv681622, nssv659589, nssv664279, nssv679895, nssv691846, nssv655301, nssv678567, nssv677191, nssv689396, nssv670136, nssv680814, nssv655030, nssv674049, nssv683431, nssv682624, nssv678068, nssv704736, nssv675306, nssv695637, nssv679152, nssv691623, nssv651701, nssv662246, nssv657340, nssv667315, nssv692489, nssv660407, nssv677983, nssv654621, nssv678214, nssv689729, nssv663211, nssv670533, nssv671488, nssv684883, nssv672674, nssv675055, nssv679376, nssv684240, nssv680767, nssv664428, nssv666943, nssv655788, nssv664500, nssv673476, nssv688549, nssv669374, nssv674717, nssv673064, nssv679355, nssv675632, nssv658378, nssv666048, nssv677125, nssv662465, nssv689970, nssv662732, nssv657439, nssv656542, nssv670162, nssv670345, nssv686776, nssv652551, nssv691750, nssv667856, nssv661758, nssv692292, nssv664380, nssv679947, nssv661790, nssv670387, nssv672371, nssv686219, nssv671772, nssv677020, nssv655710, nssv680142, nssv678506, nssv659937, nssv683586, nssv692293, nssv665262, nssv692798, nssv670268, nssv690912, nssv659069, nssv679754, nssv682517, nssv654401, nssv682982, nssv680481, nssv666623, nssv681550, nssv684313, nssv672482, nssv680210, nssv664592, nssv660243, nssv662811, nssv693330, nssv687864, nssv682922, nssv682345, nssv660225, nssv676107, nssv667062, nssv666818, nssv688994, nssv678507, nssv652713, nssv688653, nssv666340, nssv657581, nssv681462, nssv681713, nssv662640, nssv660122, nssv657839, nssv668383, nssv690937, nssv659895, nssv665666, nssv680109, nssv671639, nssv672072, nssv682225, nssv658538, nssv680343, nssv673201, nssv654860, nssv652142, nssv678004, nssv654255, nssv690038, nssv695534, nssv662760, nssv665747, nssv693032, nssv675541, nssv661833, nssv680535, nssv677360, nssv658011, nssv655523, nssv684907, nssv689576, nssv665822, nssv690996, nssv662378, nssv693851, nssv685368, nssv674305, nssv672402, nssv651671, nssv686380, nssv679694, nssv655096, nssv655132, nssv681481, nssv660865, nssv669797, nssv675813, nssv672131, nssv656777, nssv691647, nssv675959, nssv661225, nssv661186, nssv690395, nssv670400, nssv690831, nssv654568, nssv671745, nssv671415, nssv673650, nssv657236, nssv679354, nssv653518, nssv659497, nssv684970, nssv688420, nssv681779, nssv693227, nssv681735, nssv687840, nssv680740, nssv660683, nssv653138, nssv652860, nssv656091, nssv679946, nssv652094, nssv655770, nssv655113, nssv656330, nssv689751, nssv693404, nssv660270, nssv653673, nssv661675, nssv677385, nssv663356, nssv676547, nssv652894, nssv677726, nssv671018, nssv664333, nssv666176, nssv654444, nssv675164, nssv670955, nssv671187, nssv675488, nssv675211, nssv658045, nssv657094, nssv661407, nssv669426, nssv654803, nssv664393, nssv660716, nssv653918, nssv675165, nssv675898, nssv685727, nssv692243, nssv674872, nssv666451, nssv665410, nssv673124, nssv691374, nssv670510, nssv686067, nssv674337, nssv665864, nssv659241, nssv691735, nssv654496, nssv653242, nssv654239, nssv693283, nssv652306, nssv683415, nssv678455, nssv673560, nssv676129, nssv691723, nssv690814, nssv682553, nssv664352, nssv683670, nssv651719, nssv664729, nssv661103, nssv676822, nssv653857, nssv654518, nssv667063, nssv679537, nssv687045, nssv685483, nssv676376, nssv667745, nssv652927, nssv671516, nssv668423, nssv689356, nssv677572, nssv675761, nssv692511, nssv662556, nssv670450, nssv669594, nssv679971, nssv669884, nssv662679, nssv687208, nssv692595, nssv656471, nssv663185, nssv660955, nssv661121, nssv669402, nssv684523, nssv684800, nssv678188, nssv656394, nssv664976, nssv668489, nssv666417, nssv691648, nssv678940, nssv664123, nssv683887, nssv693492, nssv659982, nssv667496, nssv680287, nssv666097

Samples

Known Genes

GOLGA8A, GOLGA8B, LPCAT4, MIR1233-1, MIR1233-2, NUTM1

Method

SNP array

Analysis

Sample-level CNVs

Platform

GPL6434

Comments

Reference

Shaikh_et_al_2009

Pubmed ID

Accession Number(s)

Frequency

Sample Size	2026
Observed Gain	26
Observed Loss	338
Observed Complex	0
Frequency	n/a