A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv517440

Internal ID

15098047

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:55572903..55836936	hg38	UCSC Ensembl
Inner	chr11:55340379..55604412	hg19	UCSC Ensembl
Inner	chr11:55096955..55360988	hg18	UCSC Ensembl
Inner	chr11:55096955..55360988	hg17	UCSC Ensembl

Cytoband

11q11

Allele length

Assembly	Allele length
hg38	264034
hg19	264034
hg18	264034
hg17	264034

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

M

Merged Variants

Supporting Variants

nssv664079, nssv665079, nssv672128, nssv690882, nssv670090, nssv671906, nssv683395, nssv692143, nssv660052, nssv662264, nssv679868, nssv684005, nssv684206, nssv682127, nssv669922, nssv688501, nssv675494, nssv677650, nssv682535, nssv653964, nssv693131, nssv653721, nssv667891, nssv663773, nssv655986, nssv658345, nssv658850, nssv656651, nssv674269, nssv687148, nssv658528, nssv663439, nssv687574, nssv675143, nssv652338, nssv683704, nssv692187, nssv693458, nssv672520, nssv667616, nssv678694, nssv655023, nssv698709, nssv657339, nssv659815, nssv688989, nssv687631, nssv676543, nssv656243, nssv689197, nssv659935, nssv654421, nssv683332, nssv688632, nssv692957, nssv672789, nssv679137, nssv690586, nssv673703, nssv657912, nssv659554, nssv660987, nssv688791, nssv668168, nssv657108, nssv659155, nssv669421, nssv670686, nssv690124, nssv652809, nssv693675, nssv673369, nssv688021, nssv691291, nssv666965, nssv682999, nssv679891, nssv688357, nssv656742, nssv658610, nssv669031, nssv653278, nssv687748, nssv691569, nssv657527, nssv680010, nssv665114, nssv665915, nssv676000, nssv653945, nssv664276, nssv666314, nssv670414, nssv676128, nssv689033, nssv654252, nssv685177, nssv692444, nssv686441, nssv655058, nssv656443, nssv665008, nssv676372, nssv688325, nssv669620, nssv673865, nssv677786, nssv676252, nssv663120, nssv671584, nssv684470, nssv666890, nssv687809, nssv672979, nssv657609, nssv666119, nssv688217, nssv664424, nssv671867, nssv675193, nssv675206, nssv679397, nssv681905, nssv669958, nssv688149, nssv661064, nssv668097, nssv665761, nssv676731, nssv660731, nssv667310, nssv675254, nssv668401, nssv688102, nssv691970, nssv681017, nssv701879, nssv687955, nssv679333, nssv652955, nssv676892, nssv670832, nssv679041, nssv656878, nssv666202, nssv682824, nssv693396, nssv662103, nssv670729, nssv651974, nssv682725, nssv684064, nssv660170, nssv692252, nssv686942, nssv676604, nssv677690, nssv668894, nssv661585, nssv679869, nssv664913, nssv689354, nssv663146, nssv665513, nssv673819, nssv659099, nssv667196, nssv683273, nssv684797, nssv677587, nssv685288, nssv681097, nssv652130, nssv662421, nssv662464, nssv670797, nssv693144, nssv661380, nssv667837, nssv669593, nssv686332, nssv661219, nssv660156, nssv655706, nssv659009, nssv669447, nssv689851, nssv684345, nssv680106, nssv653658, nssv680140, nssv687021, nssv661708, nssv656257, nssv661036, nssv656456, nssv663355, nssv667516, nssv693563, nssv653566, nssv661137, nssv684612, nssv662573, nssv693542, nssv670582, nssv678428, nssv660610, nssv670023, nssv680992, nssv701052, nssv679370, nssv654639, nssv673264, nssv682043, nssv682862, nssv655582, nssv678997, nssv662399, nssv689088, nssv664773, nssv675331, nssv675827, nssv668345, nssv685395, nssv663663, nssv669828, nssv665645, nssv669169, nssv701053, nssv653134, nssv666745, nssv681639, nssv685771, nssv672547, nssv685510, nssv691246, nssv656002, nssv665835, nssv668698, nssv661940, nssv660210, nssv685347, nssv687191, nssv668074, nssv681936, nssv667703, nssv658278, nssv685901, nssv653327, nssv653457, nssv669844, nssv678589, nssv676570, nssv665860, nssv661976, nssv668948, nssv683505, nssv681734, nssv678879, nssv688241, nssv671961, nssv690994, nssv669210, nssv657575, nssv661827, nssv654491, nssv660884, nssv670189, nssv652378, nssv678502, nssv652684, nssv653425, nssv661594, nssv673063, nssv682695, nssv656037, nssv657712, nssv679351, nssv655729, nssv657546, nssv674330, nssv660864, nssv655204, nssv677184, nssv664305, nssv672999, nssv674299, nssv686892, nssv674019, nssv680664, nssv657899, nssv678662, nssv658967, nssv662507, nssv668842, nssv681968, nssv685158, nssv660288, nssv657833, nssv672561, nssv663814, nssv657736, nssv671604, nssv653671, nssv670951, nssv668611, nssv692930, nssv681031, nssv687343, nssv690711, nssv658106, nssv690527, nssv666689, nssv672012, nssv675692, nssv661896, nssv681273, nssv685008, nssv689121, nssv687652, nssv665576, nssv674675, nssv676464, nssv687000, nssv693715, nssv687128, nssv656944, nssv677720, nssv687905, nssv689892, nssv700828, nssv652706, nssv654663, nssv684710, nssv684819, nssv674193, nssv684485, nssv665987, nssv679689, nssv693625, nssv677383, nssv652548, nssv652574, nssv655355, nssv664376, nssv666027, nssv669089, nssv663021, nssv669639, nssv680166, nssv654799, nssv680907, nssv670709, nssv665037, nssv675441, nssv658748, nssv666336, nssv691666, nssv660428, nssv686859, nssv672346, nssv687927, nssv684881, nssv666586, nssv689061, nssv689569, nssv666731, nssv683665, nssv654046, nssv673443, nssv693428, nssv656300, nssv668661, nssv681210, nssv672366, nssv659352, nssv664561, nssv660467, nssv669048, nssv664605, nssv685939, nssv679941, nssv687204, nssv675665, nssv684521, nssv665554, nssv659656, nssv682196, nssv659081, nssv676843, nssv655519, nssv693738, nssv674742, nssv669271, nssv688903, nssv659141, nssv660583, nssv658733, nssv693487, nssv693869, nssv667222, nssv663793, nssv654750, nssv663697, nssv692051, nssv692832, nssv674770, nssv689827, nssv659448, nssv663640, nssv688544, nssv692324, nssv657131, nssv685196, nssv674045, nssv682953, nssv687788, nssv670982, nssv684750, nssv664331, nssv674524, nssv692356, nssv660647, nssv675594, nssv653881, nssv667768, nssv676291, nssv676501, nssv683044, nssv682254, nssv681822, nssv657378, nssv658591, nssv681664, nssv654946, nssv688255, nssv670063, nssv656114, nssv659605, nssv666070, nssv693848, nssv669236, nssv672653, nssv680584, nssv663370, nssv673632, nssv689165, nssv668470, nssv658468, nssv660485, nssv686562, nssv691153, nssv656200, nssv679059, nssv680034, nssv652092, nssv678165, nssv703353, nssv680593, nssv681952, nssv687557, nssv687838, nssv651904, nssv688856, nssv666093, nssv678771, nssv679821, nssv652758, nssv665543, nssv679268, nssv680695, nssv681247, nssv681967, nssv662134, nssv672065, nssv678291, nssv664402, nssv665304, nssv675626, nssv677609, nssv662650, nssv693278, nssv692604, nssv667375, nssv677085, nssv676631, nssv675401, nssv684730, nssv690000, nssv691499, nssv669187, nssv677212, nssv678044, nssv652342, nssv655275, nssv683683, nssv692024, nssv662376, nssv686671, nssv652391, nssv653185, nssv675539, nssv659217, nssv668579, nssv690547, nssv669994, nssv687847, nssv663537, nssv669469, nssv652277, nssv689965, nssv690338, nssv700597, nssv686660, nssv654373, nssv655643, nssv662855, nssv693827, nssv665703, nssv692775, nssv693325, nssv671684, nssv664547, nssv680371, nssv677371, nssv667046, nssv692275

Samples

Known Genes

OR4C11, OR4C16, OR4C6, OR4P4, OR4S2, OR5D13, OR5D14, OR5D18, OR5L1, OR5L2

Method

SNP array

Analysis

Sample-level CNVs

Platform

GPL6434

Comments

Reference

Shaikh_et_al_2009

Pubmed ID

Accession Number(s)

Frequency

Sample Size	2026
Observed Gain	41
Observed Loss	513
Observed Complex	0
Frequency	n/a