A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv516841

Internal ID

15444134

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:162405391..162485225	hg38	UCSC Ensembl
Inner	chr3:162123179..162203013	hg19	UCSC Ensembl
Inner	chr3:163605873..163685707	hg18	UCSC Ensembl
Inner	chr3:163605881..163685715	hg17	UCSC Ensembl

Cytoband

3q26.1

Allele length

Assembly	Allele length
hg38	79835
hg19	79835
hg18	79835
hg17	79835

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

M

Merged Variants

Supporting Variants

nssv678398, nssv687158, nssv683861, nssv685603, nssv661782, nssv681580, nssv678328, nssv658935, nssv688344, nssv660676, nssv656166, nssv663107, nssv655633, nssv657954, nssv666323, nssv663247, nssv671749, nssv671627, nssv693232, nssv662299, nssv683401, nssv679844, nssv672771, nssv657903, nssv684210, nssv676591, nssv653466, nssv661566, nssv691699, nssv676155, nssv676716, nssv665290, nssv670690, nssv663761, nssv667870, nssv665768, nssv683451, nssv676037, nssv662538, nssv687330, nssv687349, nssv657459, nssv678712, nssv663324, nssv653749, nssv656448, nssv692899, nssv688887, nssv674387, nssv687777, nssv666214, nssv667323, nssv679980, nssv661153, nssv672287, nssv679063, nssv677196, nssv689830, nssv684070, nssv673382, nssv661543, nssv677508, nssv663044, nssv669903, nssv672598, nssv674609, nssv654077, nssv690836, nssv661588, nssv690763, nssv690498, nssv660542, nssv682660, nssv660151, nssv651747, nssv676896, nssv674569, nssv677792, nssv681468, nssv684680, nssv658659, nssv678634, nssv652021, nssv675434, nssv676342, nssv676266, nssv671008, nssv692452, nssv677597, nssv690971, nssv691232, nssv693015, nssv693472, nssv692519, nssv654811, nssv659304, nssv660094, nssv659481, nssv663800, nssv652367, nssv692263, nssv676505, nssv656950, nssv654704, nssv679502, nssv670737, nssv673450, nssv670010, nssv664529, nssv682152, nssv660614, nssv693261, nssv690853, nssv663027, nssv677059, nssv691311, nssv655773, nssv683510, nssv689710, nssv669625, nssv655186, nssv671077, nssv688722, nssv654962, nssv690939, nssv676663, nssv675094, nssv673031, nssv653285, nssv662385, nssv681003, nssv653957, nssv692153, nssv675943, nssv662603, nssv660276, nssv688973, nssv658053, nssv683212, nssv664358, nssv687381, nssv687245, nssv685617, nssv678515, nssv671497, nssv667881, nssv667203, nssv664577, nssv681039, nssv668356, nssv677852, nssv704826, nssv660456, nssv679409, nssv690135, nssv666462, nssv674345, nssv656760, nssv654500, nssv691162, nssv693315, nssv682627, nssv673592, nssv692358

Samples

Known Genes

Method

SNP array

Analysis

Sample-level CNVs

Platform

GPL6434

Comments

Reference

Shaikh_et_al_2009

Pubmed ID

Accession Number(s)

Frequency

Sample Size	2026
Observed Gain	0
Observed Loss	164
Observed Complex	0
Frequency	n/a