Variant Details

Variant: nsv515228

Internal ID

15813585

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chrY:23385945..23472183	hg38	UCSC Ensembl
Inner	chrY:25532092..25618330	hg19	UCSC Ensembl
Inner	chrY:23941480..24027718	hg18	UCSC Ensembl

Cytoband

Yq11.223

Allele length

Assembly	Allele length
hg38	86239
hg19	86239
hg18	86239

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2995653, nssv2995569, nssv2995712, nssv2995627, nssv2995610, nssv2995620, nssv2995642, nssv2995577, nssv2995769, nssv2995754, nssv2995567, nssv2995594, nssv2995691, nssv2995622, nssv2995751, nssv2995768, nssv2995727, nssv2995632, nssv2995612, nssv2995750, nssv2995763, nssv2995743, nssv2995669, nssv2995597, nssv2995735, nssv2995721, nssv2995634, nssv2995657, nssv2995638, nssv2995602, nssv2995682, nssv2995660, nssv2995639, nssv2995707, nssv2995570, nssv2995681, nssv2995626, nssv2995678, nssv2995559, nssv2995688, nssv2995766, nssv2995683, nssv2995694, nssv2995552, nssv2995605, nssv2995739, nssv2995589, nssv2995684, nssv2995666, nssv2995595, nssv2995618, nssv2995709, nssv2995581, nssv2995725, nssv2995630, nssv2995623, nssv2995574, nssv2995566, nssv2995714, nssv2995544, nssv2995748, nssv2995760, nssv2995637, nssv2995547, nssv2995546, nssv2995742, nssv2995604, nssv2995676, nssv2995695, nssv2995700, nssv2995744, nssv2995731, nssv2995646, nssv2995777, nssv2995685, nssv2995668, nssv2995654, nssv2995656, nssv2995741, nssv2995663, nssv2995603, nssv2995702, nssv2995652, nssv2995759, nssv2995593, nssv2995615, nssv2995641, nssv2995729, nssv2995633, nssv2995583, nssv2995555, nssv2995659, nssv2995575, nssv2995698, nssv2995747, nssv2995582, nssv2995711, nssv2995662, nssv2995580, nssv2995647, nssv2995549, nssv2995724, nssv2995697, nssv2995614, nssv2995736, nssv2995770, nssv2995680, nssv2995550, nssv2995643, nssv2995706, nssv2995571, nssv2995753, nssv2995699, nssv2995718, nssv2995689, nssv2995619, nssv2995775, nssv2995696, nssv2995572, nssv2995734, nssv2995629, nssv2995609, nssv2995690, nssv2995722, nssv2995716, nssv2995640, nssv2995584, nssv2995730, nssv2995554, nssv2995765, nssv2995576, nssv2995675, nssv2995621, nssv2995560, nssv2995664, nssv2995599, nssv2995591, nssv2995674, nssv2995650, nssv2995764, nssv2995778, nssv2995717, nssv2995635, nssv2995585, nssv2995677, nssv2995564, nssv2995740, nssv2995732, nssv2995565, nssv2995661, nssv2995625, nssv2995752, nssv2995670, nssv2995600, nssv2995704, nssv2995701, nssv2995616, nssv2995703, nssv2995558, nssv2995762, nssv2995608, nssv2995636, nssv2995767, nssv2995607, nssv2995720, nssv2995651, nssv2995551, nssv2995745, nssv2995655, nssv2995611, nssv2995573, nssv2995738, nssv2995692, nssv2995644, nssv2995693, nssv2995710, nssv2995672, nssv2995617, nssv2995667, nssv2995772, nssv2995545, nssv2995757, nssv2995673, nssv2995687, nssv2995774, nssv2995715, nssv2995771, nssv2995713, nssv2995719, nssv2995758, nssv2995728, nssv2995726, nssv2995590, nssv2995548, nssv2995773, nssv2995686, nssv2995628, nssv2995606, nssv2995756, nssv2995556, nssv2995705, nssv2995755, nssv2995588, nssv2995579, nssv2995723, nssv2995679, nssv2995563, nssv2995781, nssv2995776, nssv2995671, nssv2995631, nssv2995553, nssv2995598, nssv2995587, nssv2995737, nssv2995708, nssv2995645, nssv2995561, nssv2995746, nssv2995733, nssv2995749, nssv2995648, nssv2995562, nssv2995568, nssv2995658, nssv2995761, nssv2995586, nssv2995557, nssv2995649, nssv2995596, nssv2995779, nssv2995624, nssv2995665, nssv2995592, nssv2995578, nssv2995613, nssv2995780, nssv2995601

Samples

NA19258, NA21317, NA12842, NA21488, NA18621, NA12286, NA18862, NA10851, NA18524, NA18935, NA12344, NA21310, NA18925, NA12801, NA12340, NA12146, NA18959, NA21475, NA21301, NA18633, NA21522, NA18510, NA12750, NA12399, NA19107, NA19192, NA19171, NA18519, NA10835, NA10846, NA21359, NA19191, NA18923, NA18558, NA07048, NA07347, NA21381, NA19130, NA11930, NA19123, NA18868, NA11994, NA19207, NA19128, NA18966, NA18990, NA21523, NA19239, NA21387, NA21344, NA12777, NA21307, NA18605, NA21313, NA12760, NA12752, NA19120, NA07022, NA19194, NA19175, NA19161, NA12485, NA19184, NA18485, NA12877, NA18871, NA19103, NA18572, NA21366, NA19208, NA11919, NA19177, NA19142, NA19150, NA12829, NA11893, NA19181, NA12056, NA19154, NA18857, NA19252, NA12144, NA10856, NA12546, NA21316, NA18974, NA12043, NA21608, NA18953, NA18632, NA19256, NA18863, NA12272, NA21718, NA21390, NA12347, NA19117, NA18501, NA06994, NA07435, NA19223, NA19178, NA07349, NA19211, NA18636, NA18509, NA18609, NA11843, NA21384, NA18872, NA19121, NA18624, NA12154, NA18612, NA10837, NA18487, NA18620, NA18497, NA19141, NA21477, NA19186, NA21383, NA19249, NA11829, NA10845, NA12814, NA18507, NA21399, NA19145, NA18917, NA18603, NA12045, NA19092, NA18486, NA21648, NA12248, NA10857, NA19098, NA12155, NA07357, NA19005, NA12812, NA19119, NA19198, NA18860, NA12891, NA11992, NA21401, NA19138, NA18498, NA06993, NA18611, NA11917, NA12282, NA12005, NA21447, NA18874, NA12274, NA06984, NA21512, NA21525, NA21453, NA21478, NA12889, NA21716, NA19189, NA21634, NA21442, NA18908, NA12375, NA19200, NA12748, NA19007, NA11831, NA21599, NA12335, NA19210, NA18934, NA12872, NA18859, NA19205, NA19236, NA18516, NA21439, NA18637, NA18910, NA11839, NA21485, NA19000, NA10830, NA18856, NA19113, NA18853, NA12827, NA12264, NA12817, NA19101, NA12766, NA21583, NA19160, NA18945, NA18608, NA06995, NA12716, NA11881, NA12864, NA12775, NA19174, NA19144, NA07051, NA18869, NA12874, NA18911, NA06986, NA19248, NA18971, NA19173, NA18994, NA10860, NA18500, NA18506, NA21581, NA21614, NA19096, NA18854, NA21312, NA21389, NA21490, NA19224, NA19146, NA21514, NA21440, NA18522, NA07034, NA18622, NA19153, NA18562, NA18965

Known Genes

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv515228

Frequency

Sample Size	2366
Observed Gain	236
Observed Loss	2
Observed Complex	0
Frequency	n/a