Variant Details

Variant: nsv515226

Internal ID

15813583

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chrY:22215717..22318915	hg38	UCSC Ensembl
Inner	chrY:24361864..24465062	hg19	UCSC Ensembl
Inner	chrY:22771252..22874450	hg18	UCSC Ensembl

Cytoband

Yq11.223

Allele length

Assembly	Allele length
hg38	103199
hg19	103199
hg18	103199

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2995456, nssv2995331, nssv2995489, nssv2995529, nssv2995530, nssv2995437, nssv2995380, nssv2995308, nssv2995528, nssv2995434, nssv2995448, nssv2995306, nssv2995486, nssv2995312, nssv2995316, nssv2995463, nssv2995330, nssv2995375, nssv2995443, nssv2995383, nssv2995321, nssv2995329, nssv2995523, nssv2995345, nssv2995445, nssv2995361, nssv2995455, nssv2995412, nssv2995379, nssv2995522, nssv2995465, nssv2995374, nssv2995360, nssv2995492, nssv2995342, nssv2995482, nssv2995410, nssv2995353, nssv2995511, nssv2995451, nssv2995449, nssv2995536, nssv2995357, nssv2995464, nssv2995407, nssv2995317, nssv2995517, nssv2995506, nssv2995524, nssv2995389, nssv2995485, nssv2995510, nssv2995534, nssv2995382, nssv2995441, nssv2995352, nssv2995521, nssv2995370, nssv2995354, nssv2995376, nssv2995440, nssv2995473, nssv2995468, nssv2995397, nssv2995369, nssv2995502, nssv2995487, nssv2995425, nssv2995417, nssv2995384, nssv2995429, nssv2995356, nssv2995359, nssv2995319, nssv2995504, nssv2995514, nssv2995457, nssv2995337, nssv2995505, nssv2995314, nssv2995377, nssv2995453, nssv2995538, nssv2995386, nssv2995488, nssv2995452, nssv2995400, nssv2995490, nssv2995418, nssv2995427, nssv2995454, nssv2995500, nssv2995499, nssv2995409, nssv2995406, nssv2995311, nssv2995419, nssv2995472, nssv2995436, nssv2995491, nssv2995323, nssv2995497, nssv2995542, nssv2995541, nssv2995525, nssv2995355, nssv2995335, nssv2995519, nssv2995333, nssv2995439, nssv2995432, nssv2995385, nssv2995343, nssv2995338, nssv2995310, nssv2995364, nssv2995526, nssv2995460, nssv2995394, nssv2995535, nssv2995413, nssv2995396, nssv2995318, nssv2995539, nssv2995459, nssv2995450, nssv2995518, nssv2995515, nssv2995351, nssv2995368, nssv2995507, nssv2995480, nssv2995327, nssv2995481, nssv2995402, nssv2995496, nssv2995470, nssv2995423, nssv2995372, nssv2995391, nssv2995326, nssv2995349, nssv2995341, nssv2995479, nssv2995476, nssv2995501, nssv2995537, nssv2995512, nssv2995399, nssv2995367, nssv2995424, nssv2995531, nssv2995392, nssv2995469, nssv2995408, nssv2995430, nssv2995346, nssv2995339, nssv2995416, nssv2995466, nssv2995373, nssv2995403, nssv2995483, nssv2995390, nssv2995467, nssv2995393, nssv2995313, nssv2995495, nssv2995348, nssv2995411, nssv2995371, nssv2995404, nssv2995444, nssv2995347, nssv2995461, nssv2995332, nssv2995532, nssv2995340, nssv2995447, nssv2995513, nssv2995477, nssv2995433, nssv2995309, nssv2995484, nssv2995520, nssv2995474, nssv2995527, nssv2995438, nssv2995365, nssv2995324, nssv2995322, nssv2995540, nssv2995381, nssv2995307, nssv2995398, nssv2995315, nssv2995415, nssv2995471, nssv2995498, nssv2995533, nssv2995350, nssv2995503, nssv2995334, nssv2995387, nssv2995405, nssv2995325, nssv2995478, nssv2995509, nssv2995328, nssv2995362, nssv2995395, nssv2995462, nssv2995494, nssv2995401, nssv2995493, nssv2995458, nssv2995516, nssv2995378, nssv2995363, nssv2995475, nssv2995344, nssv2995414, nssv2995435, nssv2995358, nssv2995431, nssv2995421, nssv2995428, nssv2995442, nssv2995366, nssv2995446, nssv2995426, nssv2995336, nssv2995420, nssv2995388, nssv2995508, nssv2995320, nssv2995422

Samples

NA19258, NA21317, NA12842, NA21488, NA21423, NA18621, NA12286, NA18862, NA10851, NA18524, NA18935, NA12344, NA21310, NA18925, NA12801, NA18504, NA12340, NA12146, NA18959, NA21475, NA18633, NA21522, NA18510, NA12750, NA12399, NA19107, NA18563, NA19192, NA19171, NA18940, NA18519, NA10835, NA10846, NA21359, NA18995, NA18923, NA18558, NA18960, NA07048, NA07347, NA21381, NA19130, NA11930, NA19123, NA18868, NA11994, NA19207, NA19128, NA18966, NA18990, NA21523, NA21387, NA12777, NA21307, NA18605, NA21313, NA12760, NA12752, NA19120, NA07022, NA19194, NA19175, NA19161, NA12485, NA19184, NA18485, NA12877, NA18871, NA19103, NA18572, NA18948, NA19208, NA11919, NA19177, NA19142, NA12829, NA11893, NA19181, NA12056, NA19154, NA19252, NA12144, NA10856, NA12546, NA19012, NA21316, NA18974, NA12043, NA18953, NA18632, NA19256, NA18863, NA12272, NA21718, NA21390, NA12347, NA19117, NA18501, NA06994, NA07435, NA19223, NA19178, NA07349, NA19211, NA18636, NA18509, NA18609, NA11843, NA21384, NA18872, NA19121, NA18624, NA12154, NA18612, NA10837, NA18487, NA18620, NA18497, NA19141, NA21477, NA19186, NA21383, NA19249, NA11829, NA10845, NA12814, NA18507, NA21399, NA19145, NA18917, NA18603, NA12045, NA19092, NA18486, NA21648, NA12248, NA10857, NA19098, NA12155, NA07357, NA18967, NA19005, NA12812, NA19119, NA18635, NA18860, NA12891, NA11992, NA21401, NA19138, NA18498, NA06993, NA18611, NA12282, NA12005, NA21447, NA18970, NA18874, NA12274, NA06984, NA21512, NA21525, NA21478, NA12889, NA21716, NA21634, NA21442, NA18908, NA12375, NA19200, NA12748, NA19007, NA11831, NA21599, NA12335, NA19210, NA18934, NA12872, NA18859, NA19205, NA19236, NA18516, NA21439, NA18637, NA18503, NA11839, NA10838, NA21485, NA19000, NA10830, NA19113, NA18853, NA12827, NA12264, NA12817, NA19101, NA12766, NA21583, NA19160, NA18945, NA18608, NA06995, NA12716, NA11881, NA18961, NA18952, NA12864, NA12775, NA19174, NA19144, NA07051, NA18869, NA12874, NA06986, NA19248, NA18971, NA19173, NA18994, NA10860, NA18500, NA18506, NA21581, NA19096, NA18854, NA21312, NA21389, NA21490, NA19224, NA19146, NA21514, NA21440, NA18522, NA07034, NA18622, NA19153, NA18562, NA18965

Known Genes

LOC100652931, RBMY1F, RBMY2FP, TTTY5

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv515226

Frequency

Sample Size	2366
Observed Gain	0
Observed Loss	237
Observed Complex	0
Frequency	n/a