Variant Details

Variant: nsv515222

Internal ID

15813579

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chrX:9398382..9424967	hg38	UCSC Ensembl
Inner	chrX:9366422..9393007	hg19	UCSC Ensembl
Inner	chrX:9326422..9353007	hg18	UCSC Ensembl

Cytoband

Xp22.31

Allele length

Assembly	Allele length
hg38	26586
hg19	26586
hg18	26586

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2994333, nssv2994528, nssv2994436, nssv2994510, nssv2994359, nssv2994346, nssv2994301, nssv2994423, nssv2994416, nssv2994483, nssv2994420, nssv2994387, nssv2994300, nssv2994432, nssv2994349, nssv2994405, nssv2994419, nssv2994306, nssv2994418, nssv2994350, nssv2994515, nssv2994337, nssv2994492, nssv2994454, nssv2994475, nssv2994548, nssv2994398, nssv2994422, nssv2994362, nssv2994324, nssv2994312, nssv2994299, nssv2994532, nssv2994328, nssv2994308, nssv2994499, nssv2994417, nssv2994453, nssv2994479, nssv2994322, nssv2994363, nssv2994326, nssv2994376, nssv2994466, nssv2994542, nssv2994538, nssv2994470, nssv2994371, nssv2994309, nssv2994437, nssv2994426, nssv2994544, nssv2994406, nssv2994430, nssv2994527, nssv2994345, nssv2994303, nssv2994390, nssv2994480, nssv2994321, nssv2994415, nssv2994380, nssv2994311, nssv2994489, nssv2994412, nssv2994353, nssv2994341, nssv2994451, nssv2994360, nssv2994340, nssv2994526, nssv2994472, nssv2994530, nssv2994355, nssv2994533, nssv2994463, nssv2994410, nssv2994488, nssv2994367, nssv2994487, nssv2994493, nssv2994378, nssv2994467, nssv2994302, nssv2994343, nssv2994439, nssv2994384, nssv2994478, nssv2994534, nssv2994373, nssv2994314, nssv2994304, nssv2994500, nssv2994386, nssv2994354, nssv2994490, nssv2994435, nssv2994462, nssv2994408, nssv2994447, nssv2994469, nssv2994425, nssv2994485, nssv2994404, nssv2994316, nssv2994536, nssv2994452, nssv2994307, nssv2994379, nssv2994310, nssv2994458, nssv2994421, nssv2994382, nssv2994320, nssv2994370, nssv2994365, nssv2994361, nssv2994519, nssv2994411, nssv2994450, nssv2994399, nssv2994357, nssv2994513, nssv2994495, nssv2994476, nssv2994438, nssv2994496, nssv2994372, nssv2994313, nssv2994524, nssv2994434, nssv2994507, nssv2994518, nssv2994391, nssv2994338, nssv2994327, nssv2994414, nssv2994460, nssv2994473, nssv2994383, nssv2994393, nssv2994388, nssv2994332, nssv2994461, nssv2994395, nssv2994481, nssv2994522, nssv2994401, nssv2994457, nssv2994431, nssv2994396, nssv2994407, nssv2994342, nssv2994374, nssv2994305, nssv2994465, nssv2994335, nssv2994339, nssv2994506, nssv2994455, nssv2994511, nssv2994514, nssv2994503, nssv2994330, nssv2994543, nssv2994502, nssv2994456, nssv2994429, nssv2994516, nssv2994501, nssv2994546, nssv2994318, nssv2994315, nssv2994403, nssv2994441, nssv2994494, nssv2994474, nssv2994366, nssv2994509, nssv2994385, nssv2994358, nssv2994539, nssv2994377, nssv2994375, nssv2994368, nssv2994331, nssv2994491, nssv2994409, nssv2994334, nssv2994459, nssv2994394, nssv2994448, nssv2994508, nssv2994525, nssv2994512, nssv2994445, nssv2994547, nssv2994504, nssv2994397, nssv2994521, nssv2994443, nssv2994364, nssv2994433, nssv2994484, nssv2994449, nssv2994442, nssv2994505, nssv2994537, nssv2994427, nssv2994329, nssv2994428, nssv2994498, nssv2994424, nssv2994468, nssv2994392, nssv2994471, nssv2994348, nssv2994540, nssv2994319, nssv2994523, nssv2994369, nssv2994535, nssv2994486, nssv2994517, nssv2994347, nssv2994298, nssv2994529, nssv2994477, nssv2994482, nssv2994317, nssv2994402, nssv2994352, nssv2994464, nssv2994325, nssv2994446, nssv2994323, nssv2994520, nssv2994351, nssv2994497, nssv2994549, nssv2994440, nssv2994541, nssv2994389, nssv2994400, nssv2994336, nssv2994356, nssv2994344, nssv2994545, nssv2994381, nssv2994444, nssv2994531, nssv2994413

Samples

NA19258, NA21317, NA12842, NA21488, NA21423, NA18621, NA12286, NA18862, NA10851, NA18524, NA18935, NA12344, NA18925, NA12801, NA18504, NA12340, NA12146, NA18959, NA21475, NA21301, NA18633, NA21522, NA18510, NA12750, NA12399, NA19107, NA18563, NA19192, NA19171, NA18940, NA18519, NA10835, NA10846, NA21359, NA18995, NA19191, NA18923, NA18558, NA18960, NA07048, NA07347, NA21381, NA19130, NA11930, NA19123, NA18868, NA11994, NA19207, NA19128, NA18966, NA18990, NA21523, NA19239, NA21387, NA21344, NA12777, NA21307, NA18605, NA21313, NA12760, NA12752, NA19120, NA07022, NA19194, NA19175, NA19161, NA12485, NA19184, NA18485, NA12877, NA18871, NA19103, NA18572, NA18948, NA21366, NA19208, NA11919, NA19177, NA19142, NA19150, NA12829, NA11893, NA19181, NA12056, NA19154, NA18857, NA19252, NA12144, NA10856, NA12546, NA19012, NA21316, NA18974, NA12043, NA21608, NA18953, NA18632, NA19256, NA18863, NA12272, NA21718, NA21390, NA12347, NA19117, NA18501, NA06994, NA07435, NA19223, NA19178, NA07349, NA19211, NA18636, NA18509, NA18609, NA11843, NA21384, NA18872, NA19121, NA18624, NA12154, NA18612, NA10837, NA18487, NA18620, NA18497, NA19141, NA21477, NA19186, NA21383, NA19249, NA11829, NA10845, NA12814, NA18507, NA21399, NA19145, NA18917, NA18603, NA12045, NA19092, NA18486, NA21648, NA12248, NA10857, NA19098, NA12155, NA07357, NA18967, NA19005, NA12812, NA19119, NA18635, NA19198, NA18860, NA12891, NA11992, NA21401, NA19138, NA18498, NA06993, NA18611, NA11917, NA12282, NA12005, NA21447, NA18970, NA18874, NA12274, NA06984, NA21512, NA21525, NA21453, NA21478, NA12889, NA21716, NA19189, NA21634, NA21442, NA18908, NA12375, NA19200, NA12748, NA19007, NA11831, NA21599, NA12335, NA19210, NA18934, NA12872, NA18859, NA19205, NA19236, NA18516, NA21439, NA18637, NA18910, NA18503, NA11839, NA10838, NA21485, NA19000, NA10830, NA18856, NA19113, NA18853, NA12827, NA12264, NA12817, NA19101, NA12766, NA21583, NA19160, NA18945, NA18608, NA06995, NA12716, NA11881, NA18961, NA18952, NA12864, NA12775, NA19174, NA19144, NA07051, NA18869, NA12874, NA18911, NA06986, NA19248, NA18971, NA19173, NA18994, NA10860, NA18500, NA18506, NA21581, NA21614, NA19096, NA18854, NA21312, NA21389, NA21490, NA19224, NA19146, NA21514, NA21440, NA18522, NA07034, NA18622, NA19153, NA18562, NA18965

Known Genes

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv515222

Frequency

Sample Size	2366
Observed Gain	0
Observed Loss	252
Observed Complex	0
Frequency	n/a