Variant Details

Variant: nsv515218

Internal ID

15813575

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chrX:88011384..88215007	hg38	UCSC Ensembl
Inner	chrX:87266384..87470008	hg19	UCSC Ensembl
Inner	chrX:87153040..87356664	hg18	UCSC Ensembl

Cytoband

Xq21.31

Allele length

Assembly	Allele length
hg38	203624
hg19	203625
hg18	203625

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2993561, nssv2993601, nssv2993405, nssv2993406, nssv2993604, nssv2993458, nssv2993552, nssv2993548, nssv2993596, nssv2993369, nssv2993392, nssv2993535, nssv2993516, nssv2993529, nssv2993591, nssv2993537, nssv2993597, nssv2993421, nssv2993582, nssv2993553, nssv2993556, nssv2993584, nssv2993536, nssv2993450, nssv2993371, nssv2993380, nssv2993479, nssv2993475, nssv2993408, nssv2993598, nssv2993605, nssv2993508, nssv2993566, nssv2993504, nssv2993578, nssv2993532, nssv2993569, nssv2993579, nssv2993568, nssv2993360, nssv2993544, nssv2993463, nssv2993595, nssv2993574, nssv2993382, nssv2993538, nssv2993485, nssv2993427, nssv2993364, nssv2993393, nssv2993480, nssv2993385, nssv2993533, nssv2993528, nssv2993370, nssv2993402, nssv2993416, nssv2993524, nssv2993576, nssv2993403, nssv2993395, nssv2993386, nssv2993572, nssv2993519, nssv2993432, nssv2993517, nssv2993609, nssv2993487, nssv2993424, nssv2993481, nssv2993460, nssv2993600, nssv2993477, nssv2993455, nssv2993557, nssv2993530, nssv2993404, nssv2993510, nssv2993453, nssv2993415, nssv2993505, nssv2993547, nssv2993473, nssv2993571, nssv2993491, nssv2993410, nssv2993490, nssv2993531, nssv2993589, nssv2993567, nssv2993503, nssv2993551, nssv2993534, nssv2993555, nssv2993398, nssv2993449, nssv2993396, nssv2993363, nssv2993442, nssv2993366, nssv2993373, nssv2993511, nssv2993494, nssv2993434, nssv2993365, nssv2993562, nssv2993454, nssv2993492, nssv2993407, nssv2993375, nssv2993549, nssv2993514, nssv2993379, nssv2993435, nssv2993606, nssv2993399, nssv2993438, nssv2993518, nssv2993496, nssv2993542, nssv2993489, nssv2993499, nssv2993439, nssv2993411, nssv2993522, nssv2993554, nssv2993391, nssv2993425, nssv2993459, nssv2993581, nssv2993387, nssv2993452, nssv2993358, nssv2993545, nssv2993583, nssv2993563, nssv2993470, nssv2993593, nssv2993389, nssv2993431, nssv2993586, nssv2993588, nssv2993525, nssv2993433, nssv2993484, nssv2993476, nssv2993397, nssv2993381, nssv2993559, nssv2993448, nssv2993409, nssv2993466, nssv2993607, nssv2993539, nssv2993446, nssv2993474, nssv2993565, nssv2993483, nssv2993440, nssv2993603, nssv2993520, nssv2993422, nssv2993543, nssv2993462, nssv2993558, nssv2993372, nssv2993506, nssv2993443, nssv2993361, nssv2993599, nssv2993401, nssv2993394, nssv2993367, nssv2993418, nssv2993383, nssv2993359, nssv2993469, nssv2993495, nssv2993471, nssv2993368, nssv2993384, nssv2993509, nssv2993482, nssv2993468, nssv2993400, nssv2993526, nssv2993515, nssv2993444, nssv2993594, nssv2993590, nssv2993486, nssv2993461, nssv2993374, nssv2993573, nssv2993465, nssv2993376, nssv2993587, nssv2993575, nssv2993550, nssv2993521, nssv2993420, nssv2993362, nssv2993501, nssv2993423, nssv2993577, nssv2993437, nssv2993488, nssv2993451, nssv2993426, nssv2993523, nssv2993592, nssv2993436, nssv2993527, nssv2993430, nssv2993541, nssv2993560, nssv2993564, nssv2993546, nssv2993513, nssv2993608, nssv2993478, nssv2993472, nssv2993540, nssv2993445, nssv2993502, nssv2993456, nssv2993570, nssv2993388, nssv2993512, nssv2993507, nssv2993441, nssv2993378, nssv2993377, nssv2993500, nssv2993580, nssv2993419, nssv2993467, nssv2993585, nssv2993390, nssv2993497, nssv2993428, nssv2993602, nssv2993414, nssv2993498, nssv2993447, nssv2993457, nssv2993417, nssv2993493, nssv2993429, nssv2993464, nssv2993413, nssv2993412

Samples

NA19258, NA21317, NA12842, NA21488, NA21423, NA18621, NA12286, NA18862, NA10851, NA18524, NA18935, NA12344, NA18925, NA12801, NA18504, NA12340, NA12146, NA18959, NA21475, NA21301, NA18633, NA21522, NA18510, NA12750, NA12399, NA19107, NA18563, NA19192, NA19171, NA18940, NA18519, NA10835, NA10846, NA21359, NA18995, NA19191, NA18923, NA18558, NA18960, NA07048, NA07347, NA21381, NA19130, NA11930, NA19123, NA18868, NA11994, NA19207, NA19128, NA18966, NA18990, NA21523, NA19239, NA21387, NA21344, NA12777, NA21307, NA18605, NA21313, NA12760, NA12752, NA19120, NA07022, NA19194, NA19175, NA19161, NA12485, NA19184, NA18485, NA12877, NA18871, NA19103, NA18572, NA18948, NA21366, NA19208, NA11919, NA19177, NA19142, NA19150, NA12829, NA11893, NA19181, NA12056, NA19154, NA18857, NA19252, NA12144, NA10856, NA12546, NA19012, NA21316, NA18974, NA12043, NA21608, NA18953, NA18632, NA19256, NA18863, NA12272, NA21718, NA21390, NA12347, NA19117, NA18501, NA06994, NA07435, NA19223, NA19178, NA07349, NA19211, NA18636, NA18509, NA18609, NA11843, NA21384, NA18872, NA19121, NA18624, NA12154, NA18612, NA10837, NA18487, NA18620, NA18497, NA19141, NA21477, NA19186, NA21383, NA19249, NA11829, NA10845, NA12814, NA18507, NA21399, NA19145, NA18917, NA18603, NA12045, NA19092, NA18486, NA21648, NA12248, NA10857, NA19098, NA12155, NA07357, NA18967, NA19005, NA12812, NA19119, NA18635, NA19198, NA18860, NA12891, NA11992, NA21401, NA19138, NA18498, NA06993, NA18611, NA11917, NA12282, NA12005, NA21447, NA18970, NA18874, NA12274, NA06984, NA21512, NA21525, NA21453, NA21478, NA12889, NA21716, NA19189, NA21634, NA21442, NA18908, NA12375, NA19200, NA12748, NA19007, NA11831, NA21599, NA12335, NA19210, NA18934, NA12872, NA18859, NA19205, NA19236, NA18516, NA21439, NA18637, NA18910, NA18503, NA11839, NA10838, NA21485, NA19000, NA10830, NA18856, NA19113, NA18853, NA12827, NA12264, NA12817, NA19101, NA12766, NA21583, NA19160, NA18945, NA18608, NA06995, NA12716, NA11881, NA18961, NA18952, NA12864, NA12775, NA19174, NA19144, NA07051, NA18869, NA12874, NA18911, NA06986, NA19248, NA18971, NA19173, NA18994, NA10860, NA18500, NA18506, NA21581, NA21614, NA19096, NA18854, NA21312, NA21389, NA21490, NA19224, NA19146, NA21514, NA21440, NA18522, NA07034, NA18622, NA19153, NA18562, NA18965

Known Genes

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv515218

Frequency

Sample Size	2366
Observed Gain	0
Observed Loss	252
Observed Complex	0
Frequency	n/a