Variant Details

Variant: nsv515164

Internal ID

15813523

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chrX:117626457..117850009	hg38	UCSC Ensembl
Inner	chrX:116760420..116983972	hg19	UCSC Ensembl
Inner	chrX:116644448..116868000	hg18	UCSC Ensembl

Cytoband

Xq23

Allele length

Assembly	Allele length
hg38	223553
hg19	223553
hg18	223553

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2978115, nssv2977950, nssv2977989, nssv2977940, nssv2978000, nssv2977954, nssv2978157, nssv2978037, nssv2978067, nssv2978073, nssv2978024, nssv2978105, nssv2978065, nssv2978145, nssv2978089, nssv2977977, nssv2978116, nssv2977995, nssv2977955, nssv2978125, nssv2978150, nssv2978060, nssv2978111, nssv2977985, nssv2978169, nssv2978054, nssv2977953, nssv2978132, nssv2977982, nssv2978099, nssv2977958, nssv2978136, nssv2977993, nssv2978121, nssv2978168, nssv2978075, nssv2978074, nssv2978045, nssv2978133, nssv2978148, nssv2978070, nssv2977951, nssv2978117, nssv2977976, nssv2977998, nssv2977938, nssv2978064, nssv2978114, nssv2978093, nssv2977944, nssv2978174, nssv2978025, nssv2978050, nssv2978139, nssv2977979, nssv2978079, nssv2978153, nssv2978042, nssv2977978, nssv2978155, nssv2978142, nssv2977963, nssv2978001, nssv2977931, nssv2977971, nssv2978097, nssv2978048, nssv2977973, nssv2978127, nssv2978147, nssv2977987, nssv2978146, nssv2977999, nssv2978124, nssv2977967, nssv2978135, nssv2978092, nssv2978110, nssv2978011, nssv2978085, nssv2978035, nssv2978081, nssv2978052, nssv2978039, nssv2977957, nssv2978167, nssv2978023, nssv2977936, nssv2977947, nssv2978134, nssv2978005, nssv2977965, nssv2978069, nssv2978003, nssv2978163, nssv2978171, nssv2978055, nssv2978102, nssv2978149, nssv2978020, nssv2978126, nssv2977990, nssv2977946, nssv2978122, nssv2977997, nssv2978152, nssv2978017, nssv2978040, nssv2978038, nssv2978108, nssv2978028, nssv2978160, nssv2978175, nssv2978068, nssv2977932, nssv2977934, nssv2977943, nssv2978141, nssv2978164, nssv2978036, nssv2978172, nssv2977983, nssv2978032, nssv2978166, nssv2977962, nssv2978076, nssv2978087, nssv2978047, nssv2978008, nssv2978096, nssv2978071, nssv2978151, nssv2978044, nssv2977991, nssv2978062, nssv2978129, nssv2978031, nssv2977975, nssv2978095, nssv2978090, nssv2978051, nssv2978144, nssv2978014, nssv2977937, nssv2978010, nssv2977952, nssv2978061, nssv2978027, nssv2978019, nssv2978137, nssv2978161, nssv2978013, nssv2978030, nssv2977966, nssv2978004, nssv2977988, nssv2977984, nssv2977926, nssv2978056, nssv2977986, nssv2978012, nssv2978033, nssv2978165, nssv2978009, nssv2978007, nssv2978016, nssv2977969, nssv2978130, nssv2977929, nssv2978072, nssv2978088, nssv2977970, nssv2978043, nssv2978123, nssv2977994, nssv2978112, nssv2978066, nssv2977948, nssv2978100, nssv2977981, nssv2977925, nssv2977956, nssv2978158, nssv2978159, nssv2978154, nssv2978084, nssv2978046, nssv2978156, nssv2978128, nssv2978162, nssv2977972, nssv2977945, nssv2977959, nssv2977941, nssv2978058, nssv2978026, nssv2978077, nssv2978063, nssv2977927, nssv2978120, nssv2977974, nssv2978104, nssv2978049, nssv2977992, nssv2978170, nssv2978098, nssv2977949, nssv2978053, nssv2978021, nssv2978113, nssv2978078, nssv2978057, nssv2978107, nssv2978101, nssv2977928, nssv2978002, nssv2978131, nssv2977964, nssv2977968, nssv2978080, nssv2978082, nssv2978006, nssv2978041, nssv2978029, nssv2977996, nssv2978118, nssv2978103, nssv2978109, nssv2978143, nssv2978106, nssv2978018, nssv2977930, nssv2978059, nssv2978034, nssv2978119, nssv2978086, nssv2977980, nssv2977924, nssv2978138, nssv2978094, nssv2978015, nssv2977935, nssv2977961, nssv2978140, nssv2978091, nssv2977933, nssv2978173, nssv2978083, nssv2978022, nssv2977960, nssv2977939, nssv2977942

Samples

NA19258, NA21317, NA12842, NA21488, NA21423, NA18621, NA12286, NA18862, NA10851, NA18524, NA18935, NA12344, NA18925, NA12801, NA18504, NA12340, NA12146, NA18959, NA21475, NA21301, NA18633, NA21522, NA18510, NA12750, NA12399, NA19107, NA18563, NA19192, NA19171, NA18940, NA18519, NA10835, NA10846, NA21359, NA18995, NA19191, NA18923, NA18558, NA18960, NA07048, NA07347, NA21381, NA19130, NA11930, NA19123, NA18868, NA11994, NA19207, NA19128, NA18966, NA18990, NA21523, NA19239, NA21387, NA21344, NA12777, NA21307, NA18605, NA21313, NA12760, NA12752, NA19120, NA07022, NA19194, NA19175, NA19161, NA12485, NA19184, NA18485, NA12877, NA18871, NA19103, NA18572, NA18948, NA21366, NA19208, NA11919, NA19177, NA19142, NA19150, NA12829, NA11893, NA19181, NA12056, NA19154, NA18857, NA19252, NA12144, NA10856, NA12546, NA19012, NA21316, NA18974, NA12043, NA21608, NA18953, NA18632, NA19256, NA18863, NA12272, NA21718, NA21390, NA12347, NA19117, NA18501, NA06994, NA07435, NA19223, NA19178, NA07349, NA19211, NA18636, NA18509, NA18609, NA11843, NA21384, NA18872, NA19121, NA18624, NA12154, NA18612, NA10837, NA18487, NA18620, NA18497, NA19141, NA21477, NA19186, NA21383, NA19249, NA11829, NA10845, NA12814, NA18507, NA21399, NA19145, NA18917, NA18603, NA12045, NA19092, NA18486, NA21648, NA12248, NA10857, NA19098, NA12155, NA07357, NA18967, NA19005, NA12812, NA19119, NA18635, NA19198, NA18860, NA12891, NA11992, NA21401, NA19138, NA18498, NA06993, NA18611, NA11917, NA12282, NA12005, NA21447, NA18970, NA18874, NA12274, NA06984, NA21512, NA21525, NA21453, NA21478, NA12889, NA21716, NA19189, NA21634, NA21442, NA18908, NA12375, NA19200, NA12748, NA19007, NA11831, NA21599, NA12335, NA19210, NA18934, NA12872, NA18859, NA19205, NA19236, NA18516, NA21439, NA18637, NA18910, NA18503, NA11839, NA10838, NA21485, NA19000, NA10830, NA18856, NA19113, NA18853, NA12827, NA12264, NA12817, NA19101, NA12766, NA21583, NA19160, NA18945, NA18608, NA06995, NA12716, NA11881, NA18961, NA18952, NA12864, NA12775, NA19174, NA19144, NA07051, NA18869, NA12874, NA18911, NA06986, NA19248, NA18971, NA19173, NA18994, NA10860, NA18500, NA18506, NA21581, NA21614, NA19096, NA18854, NA21312, NA21389, NA21490, NA19224, NA19146, NA21514, NA21440, NA18522, NA07034, NA18622, NA19153, NA18562, NA18965

Known Genes

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv515164

Frequency

Sample Size	2366
Observed Gain	0
Observed Loss	252
Observed Complex	0
Frequency	n/a