Variant Details

Variant: nsv514324

Internal ID

15466012

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:140844231..140859031	hg38	UCSC Ensembl
Inner	chr5:140223816..140238616	hg19	UCSC Ensembl
Inner	chr5:140204000..140218800	hg18	UCSC Ensembl

Cytoband

5q31.3

Allele length

Assembly	Allele length
hg38	14801
hg19	14801
hg18	14801

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2917693, nssv2917705, nssv2917707, nssv2917688, nssv2917733, nssv2917684, nssv2917703, nssv2917687, nssv2917735, nssv2917683, nssv2917706, nssv2917666, nssv2917672, nssv2917712, nssv2917668, nssv2917681, nssv2917664, nssv2917699, nssv2917669, nssv2917665, nssv2917708, nssv2917738, nssv2917740, nssv2917743, nssv2917724, nssv2917700, nssv2917739, nssv2917718, nssv2917731, nssv2917714, nssv2917717, nssv2917676, nssv2917730, nssv2917673, nssv2917713, nssv2917737, nssv2917696, nssv2917690, nssv2917695, nssv2917671, nssv2917674, nssv2917728, nssv2917702, nssv2917742, nssv2917670, nssv2917698, nssv2917732, nssv2917726, nssv2917716, nssv2917736, nssv2917710, nssv2917686, nssv2917685, nssv2917709, nssv2917719, nssv2917667, nssv2917701, nssv2917675, nssv2917727, nssv2917723, nssv2917722, nssv2917691, nssv2917721, nssv2917689, nssv2917694, nssv2917679, nssv2917715, nssv2917697, nssv2917682, nssv2917734, nssv2917678, nssv2917677, nssv2917704, nssv2917729, nssv2917711, nssv2917720, nssv2917680, nssv2917725, nssv2917692, nssv2917741

Samples

NA19141, NA18861, NA10851, NA12767, NA12236, NA21476, NA12344, NA21717, NA12801, NA21301, NA18563, NA19005, NA12812, NA21359, NA12287, NA21365, NA21391, NA12282, NA07019, NA18874, NA21512, NA21525, NA19235, NA19172, NA12815, NA18990, NA10855, NA21523, NA21634, NA21313, NA12489, NA07022, NA19236, NA18637, NA12376, NA21438, NA21366, NA19179, NA12818, NA11919, NA19142, NA18518, NA12829, NA19151, NA11894, NA10830, NA12056, NA12827, NA19099, NA19252, NA12778, NA21608, NA06995, NA12716, NA19149, NA21425, NA19100, NA21718, NA21615, NA21390, NA10840, NA07037, NA21361, NA12347, NA21404, NA10843, NA19173, NA12749, NA18500, NA19185, NA18609, NA21581, NA21312, NA07056, NA18511, NA21514, NA21440, NA10864, NA12776, NA11832

Known Genes

PCDHA1, PCDHA10, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv514324

Frequency

Sample Size	2366
Observed Gain	0
Observed Loss	80
Observed Complex	0
Frequency	n/a