Variant Details

Variant: nsv514191

Internal ID

15465883

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:189646285..189820797	hg38	UCSC Ensembl
Inner	chr3:189364074..189538586	hg19	UCSC Ensembl
Inner	chr3:190846768..191021280	hg18	UCSC Ensembl

Cytoband

3q28

Allele length

Assembly	Allele length
hg38	174513
hg19	174513
hg18	174513

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv2895266, nssv2895225, nssv2895200, nssv2895149, nssv2895211, nssv2895251, nssv2895294, nssv2895217, nssv2895213, nssv2895205, nssv2895192, nssv2895165, nssv2895155, nssv2895290, nssv2895289, nssv2895223, nssv2895179, nssv2895281, nssv2895182, nssv2895170, nssv2895216, nssv2895156, nssv2895161, nssv2895221, nssv2895298, nssv2895279, nssv2895234, nssv2895287, nssv2895208, nssv2895176, nssv2895160, nssv2895236, nssv2895306, nssv2895248, nssv2895246, nssv2895202, nssv2895244, nssv2895171, nssv2895271, nssv2895191, nssv2895166, nssv2895215, nssv2895163, nssv2895226, nssv2895210, nssv2895305, nssv2895280, nssv2895262, nssv2895273, nssv2895190, nssv2895230, nssv2895259, nssv2895186, nssv2895257, nssv2895207, nssv2895158, nssv2895261, nssv2895212, nssv2895242, nssv2895302, nssv2895275, nssv2895253, nssv2895258, nssv2895219, nssv2895285, nssv2895269, nssv2895189, nssv2895222, nssv2895187, nssv2895198, nssv2895308, nssv2895174, nssv2895206, nssv2895307, nssv2895227, nssv2895204, nssv2895303, nssv2895162, nssv2895291, nssv2895247, nssv2895185, nssv2895288, nssv2895153, nssv2895228, nssv2895168, nssv2895295, nssv2895229, nssv2895304, nssv2895274, nssv2895243, nssv2895292, nssv2895178, nssv2895252, nssv2895233, nssv2895263, nssv2895209, nssv2895177, nssv2895218, nssv2895152, nssv2895214, nssv2895256, nssv2895220, nssv2895195, nssv2895188, nssv2895284, nssv2895267, nssv2895239, nssv2895265, nssv2895150, nssv2895293, nssv2895282, nssv2895268, nssv2895283, nssv2895297, nssv2895241, nssv2895159, nssv2895232, nssv2895240, nssv2895164, nssv2895154, nssv2895175, nssv2895183, nssv2895238, nssv2895194, nssv2895254, nssv2895296, nssv2895286, nssv2895260, nssv2895250, nssv2895245, nssv2895224, nssv2895193, nssv2895300, nssv2895172, nssv2895309, nssv2895299, nssv2895270, nssv2895277, nssv2895201, nssv2895169, nssv2895278, nssv2895181, nssv2895237, nssv2895180, nssv2895276, nssv2895157, nssv2895264, nssv2895199, nssv2895272, nssv2895203, nssv2895255, nssv2895151, nssv2895167, nssv2895301, nssv2895235, nssv2895249, nssv2895173, nssv2895197, nssv2895196, nssv2895184, nssv2895231

Samples

NA18998, NA19237, NA19141, NA21636, NA12842, NA18947, NA19249, NA10845, NA18592, NA18508, NA19122, NA18935, NA18507, NA18999, NA18917, NA18603, NA12045, NA19092, NA18545, NA18504, NA12340, NA18959, NA12832, NA19190, NA18633, NA21522, NA12399, NA18969, NA18967, NA18563, NA19005, NA18940, NA19201, NA21359, NA18995, NA19191, NA19119, NA18635, NA19198, NA18558, NA18547, NA18942, NA21479, NA19197, NA18571, NA19138, NA18949, NA18611, NA18970, NA12274, NA18868, NA21512, NA21454, NA21716, NA18990, NA19239, NA19209, NA21634, NA18975, NA21400, NA21599, NA21480, NA21313, NA19210, NA12753, NA10836, NA19175, NA19152, NA19161, NA18933, NA19184, NA19236, NA18516, NA12877, NA18637, NA18579, NA18910, NA18503, NA19221, NA18907, NA18537, NA18566, NA18573, NA19114, NA19177, NA19142, NA19118, NA19000, NA12386, NA12829, NA19181, NA19151, NA18856, NA12249, NA19154, NA18857, NA12827, NA12264, NA19099, NA12817, NA10852, NA18555, NA19252, NA19225, NA21583, NA19160, NA18570, NA19012, NA18974, NA18576, NA18608, NA21608, NA18953, NA18978, NA18632, NA19183, NA19115, NA19108, NA18961, NA19149, NA18564, NA12272, NA19174, NA12873, NA18992, NA21615, NA21390, NA12763, NA21513, NA18911, NA18594, NA19117, NA18501, NA19109, NA19248, NA21404, NA19223, NA18987, NA19211, NA18994, NA18500, NA18609, NA18506, NA18873, NA21614, NA21486, NA19096, NA18854, NA21455, NA21312, NA18852, NA18968, NA12890, NA21487, NA18511, NA21514, NA18612, NA18622, NA19153, NA18620, NA18997

Known Genes

TP63

Method

Oligo aCGH

Analysis

ADM2 threshold = 5

Platform

Agilent Eichler Human CNP 180K v3.0

Comments

Reference

Campbell_et_al_2011

Pubmed ID

21397061

Accession Number(s)

nsv514191

Frequency

Sample Size	2366
Observed Gain	0
Observed Loss	161
Observed Complex	0
Frequency	n/a