A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv499794



Internal ID15815890
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrY:21010649..21065474hg38UCSC Ensembl
chrY:23172535..23227360hg19UCSC Ensembl
chrY:21581923..21636748hg18UCSC Ensembl
CytobandYq11.223
Allele length
AssemblyAllele length
hg3854826
hg1954826
hg1854826
Variant TypeOTHER inversion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv585599
Samples
Known Genes
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nsv499794
Frequency
Sample Size9
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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