A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv499693



Internal ID15469053
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:29883324..29938238hg38UCSC Ensembl
chr6:29851101..29906015hg19UCSC Ensembl
chr6:29959080..30013994hg18UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg3854915
hg1954915
hg1854915
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv585977
Samples
Known GenesHCG4B, HLA-H
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nsv499693
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer