A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv499137



Internal ID15468497
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:76515456..76527667hg38UCSC Ensembl
chr7:76144773..76156984hg19UCSC Ensembl
chr7:75982709..75994920hg18UCSC Ensembl
Cytoband7q11.23
Allele length
AssemblyAllele length
hg3812212
hg1912212
hg1812212
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv586027
Samples
Known GenesUPK3B
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nsv499137
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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