A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv499097



Internal ID15815193
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:122603268..122619008hg38UCSC Ensembl
chr10:124362784..124378524hg19UCSC Ensembl
chr10:124352774..124368514hg18UCSC Ensembl
Cytoband10q26.13
Allele length
AssemblyAllele length
hg3815741
hg1915741
hg1815741
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv585634
Samples
Known GenesDMBT1
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nsv499097
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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