A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv498695



Internal ID15469222
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:180780632..180786262hg38UCSC Ensembl
chr1:180749768..180755398hg19UCSC Ensembl
chr1:179016391..179022021hg18UCSC Ensembl
Cytoband1q25.3
Allele length
AssemblyAllele length
hg385631
hg195631
hg185631
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv585409
Samples
Known GenesXPR1
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nsv498695
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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