A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv483062



Internal ID6081165
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:179176015..179335596hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg19n/a
Variant TypeCNV Loss
Copy Number
Allele State
Allele OriginNot tested
Probe Count
Merged StatusM
Merged Variants
Supporting Variantsnssv650812
Samples
Known GenesC5orf45, LTC4S, MAML1, MGAT4B, MIR1229, SQSTM1, TBC1D9B
Method
AnalysisFollowing background subtraction, initial fluorescent ratios were transformed to log2 values, and data points greater than 2 standard deviations away from the population mean ratio were identified. These \outliers\ were removed, and the procedure was repeated until the data points were all within the 2 standard deviations-established threshold. Regression was performed against a ratio value of 1. The ratios for each clone were subsequently plotted into chromosome-specific profiles.
PlatformSpectral Genomics 2600 BAC array
CommentsRP11-443M9 (NCBI34)
ReferenceIafrate et al 2004
Pubmed ID15286789
Accession Number(s)nsv483062
Frequency
Sample Size0
Observed Gain0
Observed Loss1
Observed Complexn/a
Frequencyn/a


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