A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv482196



Internal ID15234669
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:70174025..70186893hg38UCSC Ensembl
Outerchr16:70207928..70220796hg19UCSC Ensembl
Outerchr16:68765429..68778297hg18UCSC Ensembl
Outerchr16:68765429..68778297hg17UCSC Ensembl
Cytoband16q22.1
Allele length
AssemblyAllele length
hg3812869
hg1912869
hg1812869
hg1712869
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv558557
SamplesKB1
Known GenesCLEC18C
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsMRCL
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nsv482196
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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