A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv482129



Internal ID15581336
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr9:33384951..33402519hg38UCSC Ensembl
Outerchr9:33384949..33402517hg19UCSC Ensembl
Outerchr9:33374949..33392517hg18UCSC Ensembl
Outerchr9:33374949..33392517hg17UCSC Ensembl
Cytoband9p13.3
Allele length
AssemblyAllele length
hg3817569
hg1917569
hg1817569
hg1717569
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv558490
SamplesKB1
Known GenesAQP7
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsAQP7
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nsv482129
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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