A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv482093



Internal ID15234566
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:177089550..177098123hg38UCSC Ensembl
Outerchr5:176516551..176525124hg19UCSC Ensembl
Outerchr5:176449157..176457730hg18UCSC Ensembl
Outerchr5:176449157..176457730hg17UCSC Ensembl
Cytoband5q35.2
Allele length
AssemblyAllele length
hg388574
hg198574
hg188574
hg178574
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv558454
SamplesKB1
Known GenesFGFR4
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsFGFR4
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nsv482093
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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