A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv482061



Internal ID15234721
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr2:239960739..240025381hg38UCSC Ensembl
Outerchr2:240900156..240964798hg19UCSC Ensembl
Outerchr2:240548829..240613471hg18UCSC Ensembl
Outerchr2:240620146..240684788hg17UCSC Ensembl
Cytoband2q37.3
Allele length
AssemblyAllele length
hg3864643
hg1964643
hg1864643
hg1764643
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv558422
SamplesKB1
Known GenesNDUFA10
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsNDUFA10
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nsv482061
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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