A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv482059



Internal ID15581266
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr1:103749818..103758688hg38UCSC Ensembl
Outerchr1:104292440..104301310hg19UCSC Ensembl
Outerchr1:104093963..104102833hg18UCSC Ensembl
Outerchr1:104004461..104013331hg17UCSC Ensembl
Cytoband1p21.1
Allele length
AssemblyAllele length
hg388871
hg198871
hg188871
hg178871
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv558420
SamplesKB1
Known GenesAMY1A, AMY1B, AMY1C
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsAMY1A
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nsv482059
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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