A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv473872



Internal ID15226621
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:202239345..202239345hg38UCSC Ensembl
chr1:202208473..202208473hg19UCSC Ensembl
chr1:200475096..200475096hg18UCSC Ensembl
chr1:198940130..198940130hg17UCSC Ensembl
Cytoband1q32.1
Allele length
AssemblyAllele length
hg381
hg191
hg181
hg171
Variant TypeCNV novel sequence insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv3015038
SamplesNA12156
Known GenesLGR6
MethodSequencing
AnalysisSearch fosmid ESPs as described in Tuzun et al (2005)
PlatformAgilent Custom Human 244K CGH Array
CommentsOEA singleton. The coordinate provided is from the mappable member of a fosmid end sequence pair, and indicates the genomic vicinity of a novel sequence insertion
ReferenceKidd_et_al_2010
Pubmed ID20440878
Accession Number(s)nsv473872
Frequency
Sample Size9
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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