Variant Details

Variant: nsv471615

Internal ID

15561129

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:238020396..238171012	hg38	UCSC Ensembl
Inner	chr1:238183696..238334312	hg19	UCSC Ensembl
Inner	chr1:236250319..236400935	hg18	UCSC Ensembl
Inner	chr1:235224845..235375461	hg16	UCSC Ensembl

Cytoband

1q43

Allele length

Assembly	Allele length
hg38	150617
hg19	150617
hg18	150617
hg16	150617

Variant Type

CNV gain+loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv549247, nssv549249, nssv549250, nssv549246, nssv549245, nssv549248, nssv549251

Samples

NA17059, NA10496, NA15727, NA15731, NA10470, NA10471, NA15724

Known Genes

Method

BAC aCGH

Analysis

Array image analysis and normalization were performed using UCSF Spot and Sproc software (Jain et al. 2002). BACs for which only one of the triplicates printed on the array yielded data, or for which the standard deviation of log2 ratio for the triplicates was 10.2, were removed from final analysis. Furthermore, we discarded BACs that failed to yield data in <20% of cases. For each hybridization experiment, we established a threshold log2 ratio of 2 SDs from the mean of all autosomal clones, and BACs that exceeded this threshold in both independent dye-swap experiments were classified as variant.

Platform

GPL4010

Comments

Reference

Sharp_et_al_2005

Pubmed ID

15918152

Accession Number(s)

nsv471615

Frequency

Sample Size	48
Observed Gain	4
Observed Loss	3
Observed Complex	0
Frequency	n/a