A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv470246



Internal ID15210119
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:142872807..142926765hg38UCSC Ensembl
Innerchr8:143954223..144008181hg19UCSC Ensembl
Innerchr8:143951225..144005183hg18UCSC Ensembl
Cytoband8q24.3
Allele length
AssemblyAllele length
hg3853959
hg1953959
hg1853959
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv546805
SamplesHGDP01412
Known GenesCYP11B1, CYP11B2
MethodSNP array
AnalysisWe used the previously validated default quality control criteria, excluding samples with a log R ratio standard deviation of >0.28, a median B allele frequency of >0.55 or <0.45, or a B allele frequency drift of >0.002 (for more details see Wang et al. 2007). As the PennCNV algorithm is more sensitive and specific to CNVs covering greater numbers of SNPs in the HumanHap550 array, use of a minimum number of SNPs in CNV detection increases the reliability of CNV calls (with a consequent reduction in calls per individual). We set 10 SNPs as the minimum detection threshold in the algorithm.
PlatformIllumina HumanHap550 Genotyping BeadChip v3
Comments
ReferenceJakobsson_et_al_2008
Pubmed ID18288195
Accession Number(s)nsv470246
Frequency
Sample Size443
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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