Variant Details

Variant: nsv469568

Internal ID

15534283

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chrX:135720375..135945271	hg38	UCSC Ensembl
Inner	chrX:134867458..135027430	hg19	UCSC Ensembl
Inner	chrX:134695124..134855096	hg18	UCSC Ensembl
Inner	chrX:133573065..133733037	hg16	UCSC Ensembl

Cytoband

Xq26.3

Allele length

Assembly	Allele length
hg38	224897
hg19	159973
hg18	159973
hg16	159973

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv1672726, nssv1675567, nssv1674513, nssv1675131, nssv1673481, nssv1672383, nssv1673019, nssv1676178, nssv1672212, nssv1672524, nssv1675272, nssv1675121, nssv1676657, nssv1672238, nssv1675426, nssv1673219, nssv1673607, nssv1674642, nssv1676116, nssv1672617, nssv1675156, nssv1672096, nssv1674906, nssv1673002, nssv1673355, nssv1675292, nssv1673691, nssv1672371, nssv1673469, nssv1674792, nssv1673921, nssv1675885, nssv1673302, nssv1675295, nssv1676555, nssv1676034, nssv1672061, nssv1675503, nssv1672644, nssv1672208, nssv1673781, nssv1672905, nssv1675750, nssv1676017, nssv1673284, nssv1674811, nssv1673845, nssv1676622, nssv1676166, nssv1675291, nssv1676155, nssv1676222, nssv1675304, nssv1674783, nssv1676346, nssv1675089, nssv1672877, nssv1676247, nssv1675460, nssv1673204, nssv1674598, nssv1676510, nssv1676582, nssv1676263, nssv1673834, nssv1673476, nssv1672864, nssv1675957, nssv1673461, nssv1675698, nssv1675599, nssv1673343, nssv1676575, nssv1674047, nssv1674688, nssv1674209, nssv1673313, nssv1674927, nssv1674260, nssv1676026, nssv1676656, nssv1673551, nssv1673437, nssv1675303, nssv1672561, nssv1672857

Samples

Known Genes

CT45A2, CT45A3, CT45A4, CT45A5, CT45A6, SAGE1

Method

BAC aCGH

Analysis

A locus was considered a CNV if the log ratio of fluorescence measurements for the individuals assayed exceeded twice the SD of the autosomal clones in both dye-swapped experiments.

Platform

GPL4010

Comments

Reference

Locke_et_al_2006

Pubmed ID

16826518

Accession Number(s)

nsv469568

Frequency

Sample Size	265
Observed Gain	86
Observed Loss	0
Observed Complex	0
Frequency	n/a