A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv469100



Internal ID15529165
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:7871766..7946706hg38UCSC Ensembl
Innerchr12:8024362..8099302hg19UCSC Ensembl
Innerchr12:7915629..7990569hg18UCSC Ensembl
Innerchr12:7915629..7990569hg17UCSC Ensembl
Cytoband12p13.31
Allele length
AssemblyAllele length
hg3874941
hg1974941
hg1874941
hg1774941
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv544084
SamplesHGDP01019
Known GenesSLC2A14, SLC2A3
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv469100
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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