A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv469000



Internal ID15529065
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:7840720..7946706hg38UCSC Ensembl
Innerchr12:7993316..8099302hg19UCSC Ensembl
Innerchr12:7884583..7990569hg18UCSC Ensembl
Innerchr12:7884583..7990569hg17UCSC Ensembl
Cytoband12p13.31
Allele length
AssemblyAllele length
hg38105987
hg19105987
hg18105987
hg17105987
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv179n27
Supporting Variantsnssv544017
SamplesHGDP00813
Known GenesSLC2A14, SLC2A3
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv469000
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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