A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv468846



Internal ID15528911
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:100138266..100165559hg38UCSC Ensembl
Innerchr11:100008998..100036291hg19UCSC Ensembl
Innerchr11:99514208..99541501hg18UCSC Ensembl
Innerchr11:99514208..99541501hg17UCSC Ensembl
Cytoband11q22.1
Allele length
AssemblyAllele length
hg3827294
hg1927294
hg1827294
hg1727294
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv543914
SamplesNINDS_103
Known GenesCNTN5
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv468846
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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