A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv468583



Internal ID15528648
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:238897660..238927640hg38UCSC Ensembl
Innerchr1:239060960..239090940hg19UCSC Ensembl
Innerchr1:237127583..237157563hg18UCSC Ensembl
Innerchr1:235387001..235416981hg17UCSC Ensembl
Cytoband1q43
Allele length
AssemblyAllele length
hg3829981
hg1929981
hg1829981
hg1729981
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv543696
SamplesHGDP00326
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv468583
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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