A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv467666



Internal ID15527731
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:4794118..4895859hg38UCSC Ensembl
Innerchr11:4815348..4917089hg19UCSC Ensembl
Innerchr11:4771924..4873665hg18UCSC Ensembl
Innerchr11:4771924..4873665hg17UCSC Ensembl
Cytoband11p15.4
Allele length
AssemblyAllele length
hg38101742
hg19101742
hg18101742
hg17101742
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv542880
Samples1780854058_A
Known GenesOR51F2, OR51S1, OR51T1, OR52R1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv467666
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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