A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv467443



Internal ID6035820
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:102689217..102767117hg19UCSC Ensembl
Innerchr10:102679207..102757107hg18UCSC Ensembl
Innerchr10:102679207..102757107hg17UCSC Ensembl
Cytoband10q24.31
Allele length
AssemblyAllele length
hg19n/a
hg18n/a
hg17n/a
Variant TypeCNV Loss
Copy Number
Allele State
Allele OriginNot tested
Probe Count
Merged StatusS
Merged Variants
Supporting Variantsnssv542734
SamplesHGDP00338
Known GenesC10orf2, FAM178A, LZTS2, MIR608, MRPL43, SEMA4G
MethodSNP_genotyping_analysis
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot Provided
Comments
ReferenceItsara et al 2009
Pubmed ID19166990
Accession Number(s)nsv467443
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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