A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466778



Internal ID15526843
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:20548066..20576228hg38UCSC Ensembl
Innerchr10:20836995..20865157hg19UCSC Ensembl
Innerchr10:20877001..20905163hg18UCSC Ensembl
Innerchr10:20877001..20905163hg17UCSC Ensembl
Cytoband10p12.31
Allele length
AssemblyAllele length
hg3828163
hg1928163
hg1828163
hg1728163
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv72n27
Supporting Variantsnssv542244
SamplesHGDP01103
Known GenesMIR4675
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466778
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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