A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466777



Internal ID15526842
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:20548066..20573498hg38UCSC Ensembl
Innerchr10:20836995..20862427hg19UCSC Ensembl
Innerchr10:20877001..20902433hg18UCSC Ensembl
Innerchr10:20877001..20902433hg17UCSC Ensembl
Cytoband10p12.31
Allele length
AssemblyAllele length
hg3825433
hg1925433
hg1825433
hg1725433
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv72n27
Supporting Variantsnssv542243
SamplesHGDP01187
Known GenesMIR4675
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466777
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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