A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466698



Internal ID15526763
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:790175..842133hg38UCSC Ensembl
Innerchr10:836115..888073hg19UCSC Ensembl
Innerchr10:826115..878073hg18UCSC Ensembl
Innerchr10:826115..878073hg17UCSC Ensembl
Cytoband10p15.3
Allele length
AssemblyAllele length
hg3851959
hg1951959
hg1851959
hg1751959
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv542178
SamplesHGDP00696
Known GenesLARP4B
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466698
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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