A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466659



Internal ID15526724
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:135640113..135689001hg38UCSC Ensembl
Innerchr9:138531959..138580847hg19UCSC Ensembl
Innerchr9:137671780..137720668hg18UCSC Ensembl
Innerchr9:135757904..135806792hg17UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg3848889
hg1948889
hg1848889
hg1748889
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv542150
Samples1780862444_A
Known GenesLCN9
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466659
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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