A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466658



Internal ID15526723
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:135572042..135584977hg38UCSC Ensembl
Innerchr9:138463888..138476823hg19UCSC Ensembl
Innerchr9:137603709..137616644hg18UCSC Ensembl
Innerchr9:135689833..135702768hg17UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg3812936
hg1912936
hg1812936
hg1712936
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv953n27
Supporting Variantsnssv542149
SamplesHGDP01179
Known GenesLOC100130954
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466658
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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