A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv466634



Internal ID15180013
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:134305392..134374858hg38UCSC Ensembl
Innerchr9:137197238..137266704hg19UCSC Ensembl
Innerchr9:136337059..136406525hg18UCSC Ensembl
Innerchr9:134376792..134446258hg17UCSC Ensembl
Cytoband9q34.2
Allele length
AssemblyAllele length
hg3869467
hg1969467
hg1869467
hg1769467
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv542134
SamplesHGDP00857
Known GenesRXRA
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nsv466634
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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